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MamA 41-end from Desulfovibrio magneticus RS-1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3AS5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.1 277 0.1 M Tris pH 8.1, 0.75 M sodium potassium tartrate and 0.5% polyethylene glycol monomethyl ether 5000
Crystal Properties Matthews coefficient Solvent content 4.77 74.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 151.087 α = 90 b = 151.087 β = 90 c = 204.903 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2011-12-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.939 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.88 22 99.8 0.065 20.4 6.2 51648
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.88 2.93 100 0.608 6.3 2587
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3AS5 2.88 22 51648 2629 99.38 0.2099 0.2094 0.2201 RANDOM 67.091
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.17 0.17 -0.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.186 r_dihedral_angle_4_deg 22.067 r_dihedral_angle_3_deg 21.224 r_scangle_it 7.853 r_dihedral_angle_1_deg 5.681 r_scbond_it 4.351 r_mcangle_it 3.063 r_angle_refined_deg 1.897 r_mcbond_it 1.459 r_angle_other_deg 1.145
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.186 r_dihedral_angle_4_deg 22.067 r_dihedral_angle_3_deg 21.224 r_scangle_it 7.853 r_dihedral_angle_1_deg 5.681 r_scbond_it 4.351 r_mcangle_it 3.063 r_angle_refined_deg 1.897 r_mcbond_it 1.459 r_angle_other_deg 1.145 r_mcbond_other 0.248 r_chiral_restr 0.104 r_bond_refined_d 0.024 r_gen_planes_refined 0.008 r_gen_planes_other 0.005 r_bond_other_d 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8530 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction BALBES phasing