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Crystal structure of addiction module from Mycobacterial species
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.2 M sodium acetate, 0.1 M sodium citrate at pH 5.5, and 5% (w/v) PEG4000
Crystal Properties Matthews coefficient Solvent content 3.31 62.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.31 α = 90 b = 96.31 β = 90 c = 233.033 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2013-06-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 0.97912 PAL/PLS 5C (4A)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 48.15 98.9 37.037 6.7 34963
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.7 48.15 33219 1672 98.82 0.24444 0.24273 0.2436 0.27757 0.2734 RANDOM 59.969
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 23.69 23.69 -47.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.383 r_dihedral_angle_3_deg 16.176 r_dihedral_angle_4_deg 11.979 r_long_range_B_refined 7.81 r_long_range_B_other 7.807 r_dihedral_angle_1_deg 6.983 r_mcangle_it 5.509 r_mcangle_other 5.508 r_scangle_other 5.251 r_mcbond_other 3.618
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.383 r_dihedral_angle_3_deg 16.176 r_dihedral_angle_4_deg 11.979 r_long_range_B_refined 7.81 r_long_range_B_other 7.807 r_dihedral_angle_1_deg 6.983 r_mcangle_it 5.509 r_mcangle_other 5.508 r_scangle_other 5.251 r_mcbond_other 3.618 r_mcbond_it 3.617 r_scbond_other 3.493 r_scbond_it 3.492 r_angle_refined_deg 1.421 r_angle_other_deg 0.979 r_chiral_restr 0.071 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4749 Nucleic Acid Atoms Solvent Atoms 55 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling SOLVE phasing