☰ Navigation Tabs
Crystal Structure of wild type human AlaRS catalytic domain
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3HXU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8.5 293 PEG3350
Crystal Properties Matthews coefficient Solvent content 2.12 41.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 108.121 α = 90 b = 67.131 β = 127.42 c = 75.107 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 173 CCD ADSC QUANTUM 315r 2011-07-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 1.0 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.278 50 99.8 0.04 35.5 3.5 109596
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.278 1.38 99.9 0.483 2.9 5498
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3HXU 1.278 37.33 104085 5511 99.49 0.1619 0.161 0.1588 0.1787 0.1773 RANDOM 18.117
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.5 -0.08 -0.02 -0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.9 r_sphericity_free 32.738 r_dihedral_angle_4_deg 13.853 r_dihedral_angle_3_deg 10.822 r_sphericity_bonded 8.391 r_dihedral_angle_1_deg 5.033 r_rigid_bond_restr 2.594 r_angle_refined_deg 1.083 r_chiral_restr 0.076 r_bond_refined_d 0.006
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.9 r_sphericity_free 32.738 r_dihedral_angle_4_deg 13.853 r_dihedral_angle_3_deg 10.822 r_sphericity_bonded 8.391 r_dihedral_angle_1_deg 5.033 r_rigid_bond_restr 2.594 r_angle_refined_deg 1.083 r_chiral_restr 0.076 r_bond_refined_d 0.006 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2962 Nucleic Acid Atoms Solvent Atoms 490 Heterogen Atoms 48
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling PDB_EXTRACT data extraction HKL-2000 data reduction MOLREP phasing