☰ Navigation Tabs
The structure of P. funicolosum Cel7A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3PL3 PDB entry 3PL3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4 293 Sitting drop with 50 uL of well solution and drops containing 0.5 uL of well solution and 1.5 uL of protein solution.
Well solution: 0.27 M sodium phosphate, 1.53 M potassium phosphate dibasic pH 4.0; Protein solution: 15.5 mg/ml of protein in 20 mM acetate, pH 5.0, 100 mM NaCl, 50 mM cellobiose, 5 mM cellohexaose
Crystal Properties Matthews coefficient Solvent content 2.06 40.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.972 α = 90 b = 61.836 β = 98.77 c = 85.849 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD Bruker Platinum 135 2013-10-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR 1.54188
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 84.84 99 0.1026 12.99 8.63 40134
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.8 94.4 0.399 1.66 2.13
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 3PL3 1.7 50 37520 1188 95.51 0.13954 0.13756 0.20301 0.1948 RANDOM 12.935
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.25 0.02 -0.31 0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.014 r_dihedral_angle_4_deg 19.1 r_dihedral_angle_1_deg 13.102 r_dihedral_angle_3_deg 12.815 r_long_range_B_refined 6.434 r_long_range_B_other 5.512 r_scangle_other 2.604 r_angle_refined_deg 1.904 r_scbond_it 1.693 r_scbond_other 1.692
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.014 r_dihedral_angle_4_deg 19.1 r_dihedral_angle_1_deg 13.102 r_dihedral_angle_3_deg 12.815 r_long_range_B_refined 6.434 r_long_range_B_other 5.512 r_scangle_other 2.604 r_angle_refined_deg 1.904 r_scbond_it 1.693 r_scbond_other 1.692 r_mcangle_it 1.691 r_mcangle_other 1.691 r_mcbond_it 1.092 r_mcbond_other 1.09 r_angle_other_deg 0.971 r_chiral_restr 0.127 r_bond_refined_d 0.018 r_gen_planes_refined 0.009 r_bond_other_d 0.006 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3177 Nucleic Acid Atoms Solvent Atoms 820 Heterogen Atoms 137
Software Software Software Name Purpose REFMAC refinement PROTEUM PLUS data scaling