☰ Navigation Tabs
OleP, the cytochrome P450 epoxidase from Streptomyces antibioticus involved in Oleandomycin biosynthesis: functional analysis and crystallographic structure in complex with clotrimazole.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2Y46 PDB entry 2Y46
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 1.6 M Ammonium Sulphate, 0.1 M HEPES Sodium Salt pH 7.5, 2% (w/v) PEG 1000
Crystal Properties Matthews coefficient Solvent content 3.4 63.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 115.937 α = 90 b = 117.379 β = 90 c = 174.664 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2010-05-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 5.2R 1.0 ELETTRA 5.2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.65 50 99.1 0.094 0.102 17.32 6.88 34700 -3 56.435
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.65 2.81 95.4 0.86 0.941 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2Y46 2.65 48.76 34700 1744 99.13 0.2095 0.2068 0.2142 0.2596 0.264 RANDOM 58.33
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.04 -1.05 4.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.434 r_dihedral_angle_3_deg 21.312 r_dihedral_angle_4_deg 18.713 r_dihedral_angle_1_deg 7.713 r_angle_refined_deg 1.772 r_angle_other_deg 0.895 r_chiral_restr 0.197 r_bond_refined_d 0.011 r_gen_planes_refined 0.008 r_gen_planes_other 0.003
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.434 r_dihedral_angle_3_deg 21.312 r_dihedral_angle_4_deg 18.713 r_dihedral_angle_1_deg 7.713 r_angle_refined_deg 1.772 r_angle_other_deg 0.895 r_chiral_restr 0.197 r_bond_refined_d 0.011 r_gen_planes_refined 0.008 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6142 Nucleic Acid Atoms Solvent Atoms 57 Heterogen Atoms 186
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling SCALA data scaling MOLREP phasing PDB_EXTRACT data extraction