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gallus interleukin-1 beta mutant - R140A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2WRY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 1.15 M (NH4)2SO4, 0.1 M Tris, 0.2 M LiSO4
Crystal Properties Matthews coefficient Solvent content 1.88 34.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.773 α = 90 b = 37.963 β = 90 c = 104.319 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2014-11-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSRRC BEAMLINE BL13B1 1 NSRRC BL13B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 26.09 98.1 32.5 8.9 15110
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2WRY 1.75 26.09 13265 709 92.46 0.22279 0.22039 0.2294 0.26824 0.2426 RANDOM 22.954
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 -0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.132 r_dihedral_angle_4_deg 16.322 r_dihedral_angle_3_deg 15.432 r_dihedral_angle_1_deg 7.516 r_long_range_B_other 7.204 r_long_range_B_refined 7.198 r_scangle_other 5.191 r_mcangle_it 3.758 r_mcangle_other 3.756 r_scbond_it 3.164
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.132 r_dihedral_angle_4_deg 16.322 r_dihedral_angle_3_deg 15.432 r_dihedral_angle_1_deg 7.516 r_long_range_B_other 7.204 r_long_range_B_refined 7.198 r_scangle_other 5.191 r_mcangle_it 3.758 r_mcangle_other 3.756 r_scbond_it 3.164 r_scbond_other 3.161 r_mcbond_it 2.307 r_mcbond_other 2.304 r_angle_refined_deg 1.883 r_angle_other_deg 0.87 r_chiral_restr 0.114 r_bond_refined_d 0.017 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1164 Nucleic Acid Atoms Solvent Atoms 59 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data scaling