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K20A RNA dependent RNA polymerase mutant from Foot-and-Mouth disease Virus complexed with an RNA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1U09
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 30% PEG 4000, 0.2M MES pH 6.0, 0.1 M Mg(COO3)2
Crystal Properties Matthews coefficient Solvent content 2.59 52.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 94.222 α = 90 b = 94.222 β = 90 c = 121.515 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2013-10-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.979469 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.94 47.11 99.6 0.098 12.8 6.7 12228
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.94 3.09 97.8 0.652 2.5 5.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1U09 2.94 47.11 11606 583 99.61 0.21722 0.21508 0.2178 0.25858 0.2603 RANDOM 47.11
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.15 0.15 -0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.288 r_dihedral_angle_3_deg 13.359 r_dihedral_angle_4_deg 11.406 r_long_range_B_refined 4.519 r_long_range_B_other 4.517 r_dihedral_angle_1_deg 4.208 r_mcangle_it 1.419 r_mcangle_other 1.419 r_scangle_other 1.189 r_mcbond_it 0.786
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.288 r_dihedral_angle_3_deg 13.359 r_dihedral_angle_4_deg 11.406 r_long_range_B_refined 4.519 r_long_range_B_other 4.517 r_dihedral_angle_1_deg 4.208 r_mcangle_it 1.419 r_mcangle_other 1.419 r_scangle_other 1.189 r_mcbond_it 0.786 r_mcbond_other 0.784 r_angle_refined_deg 0.763 r_scbond_it 0.684 r_scbond_other 0.684 r_angle_other_deg 0.673 r_chiral_restr 0.049 r_bond_refined_d 0.004 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3753 Nucleic Acid Atoms 280 Solvent Atoms 14 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling REFMAC phasing