☰ Navigation Tabs
The crystal structure of mupain-1-17 in complex with murinised human uPA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 298 2.0 M ammonium sulfate, 50 mM sodium citrate pH 4.6, 5% PEG 400
Crystal Properties Matthews coefficient Solvent content 2.05 40.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 120.641 α = 90 b = 120.641 β = 90 c = 42.657 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2011-11-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.979 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 99 94.6 14.8 2 12802
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.1 60.32 12159 639 94.62 0.23788 0.23603 0.2342 0.27222 0.2746 RANDOM 43.523
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.76 -0.88 -1.76 2.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.026 r_dihedral_angle_4_deg 22.365 r_dihedral_angle_3_deg 19.051 r_dihedral_angle_1_deg 7.608 r_scangle_it 4.285 r_scbond_it 2.947 r_angle_refined_deg 2.807 r_mcangle_it 2.07 r_mcbond_it 1.198 r_chiral_restr 0.143
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.026 r_dihedral_angle_4_deg 22.365 r_dihedral_angle_3_deg 19.051 r_dihedral_angle_1_deg 7.608 r_scangle_it 4.285 r_scbond_it 2.947 r_angle_refined_deg 2.807 r_mcangle_it 2.07 r_mcbond_it 1.198 r_chiral_restr 0.143 r_bond_refined_d 0.048 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2028 Nucleic Acid Atoms Solvent Atoms 29 Heterogen Atoms 14
Software Software Software Name Purpose REFMAC refinement Coot model building