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Trypanosoma brucei haptoglobin-haemoglobin receptor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4X0I
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 0.15 M KBr, 30 % w/v PEG 2000 MME
Crystal Properties Matthews coefficient Solvent content 2.38 48.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 27.9 α = 90 b = 47.79 β = 92.79 c = 203.38 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-02-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9763 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 203.14 97.4 0.099 10.2 3.1 44672
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.85 1.95 96.4 0.64 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4X0I 1.85 203.14 42418 2250 96.99 0.20074 0.19863 0.2083 0.23998 0.2508 RANDOM 30.564
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.64 -1.29 -0.69 -0.82
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 6.464 r_long_range_B_other 6.411 r_scangle_other 6.22 r_scbond_it 4.162 r_scbond_other 4.161 r_mcangle_it 3.107 r_mcangle_other 3.107 r_mcbond_it 2.365 r_mcbond_other 2.361 r_angle_refined_deg 1.658
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 6.464 r_long_range_B_other 6.411 r_scangle_other 6.22 r_scbond_it 4.162 r_scbond_other 4.161 r_mcangle_it 3.107 r_mcangle_other 3.107 r_mcbond_it 2.365 r_mcbond_other 2.361 r_angle_refined_deg 1.658 r_angle_other_deg 1.247 r_chiral_restr 0.134 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_bond_other_d 0.006 r_gen_planes_other 0.005 r_dihedral_angle_1_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3941 Nucleic Acid Atoms Solvent Atoms 264 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing