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Mutant K18E of RNA dependent RNA polymerase from Foot-and-Mouth Disease Virus complexed with RNA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1WNE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 293 30% PEG 4K; 0.2M Mg(CH3COO)2, 0.1M MES pH6.0; 4% gamma- butyrolactone
Crystal Properties Matthews coefficient Solvent content 2.51 51.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 94.306 α = 90 b = 94.306 β = 90 c = 100.815 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2011-07-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 1.7 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.57 63.63 99 0.065 9.3 2.8 18038
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.57 2.71 97.5 0.327 2.8 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1WNE 2.52 81.67 17053 848 99.74 0.22623 0.22449 0.2278 0.26156 0.2595 RANDOM 63.747
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.67 0.33 0.67 -2.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.153 r_dihedral_angle_3_deg 14.303 r_dihedral_angle_4_deg 12.952 r_long_range_B_refined 6.514 r_long_range_B_other 6.514 r_dihedral_angle_1_deg 5.044 r_mcangle_it 3.727 r_mcangle_other 3.726 r_scangle_other 3.345 r_mcbond_it 2.203
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.153 r_dihedral_angle_3_deg 14.303 r_dihedral_angle_4_deg 12.952 r_long_range_B_refined 6.514 r_long_range_B_other 6.514 r_dihedral_angle_1_deg 5.044 r_mcangle_it 3.727 r_mcangle_other 3.726 r_scangle_other 3.345 r_mcbond_it 2.203 r_mcbond_other 2.2 r_scbond_it 1.952 r_scbond_other 1.951 r_angle_refined_deg 0.946 r_angle_other_deg 0.731 r_chiral_restr 0.058 r_bond_refined_d 0.005 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3732 Nucleic Acid Atoms 317 Solvent Atoms 35 Heterogen Atoms 17
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling REFMAC phasing