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Mutant K20E of 3D polymerase from Foot-and-Mouth Disease Virus
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1U09
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 293 30% PEG4000, 0.2M Mg(CH3COO)2, 0.1M MES pH6.0, 4% gamma-butyrolactone
Crystal Properties Matthews coefficient Solvent content 2.39 48.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.7 α = 90 b = 91.7 β = 90 c = 118.13 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2012-03-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.9801 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 46.6 99.8 0.059 24.15 8.7 47356
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.91 98.8 0.577 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1U09 1.8 46.6 44977 2368 99.78 0.20411 0.20296 0.2088 0.22663 0.2304 RANDOM 25.72
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.45 0.45 -0.9
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.037 r_dihedral_angle_3_deg 10.632 r_dihedral_angle_4_deg 10.155 r_dihedral_angle_1_deg 4.364 r_long_range_B_refined 2.812 r_long_range_B_other 2.812 r_mcangle_it 0.91 r_mcangle_other 0.91 r_angle_refined_deg 0.793 r_scangle_other 0.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.037 r_dihedral_angle_3_deg 10.632 r_dihedral_angle_4_deg 10.155 r_dihedral_angle_1_deg 4.364 r_long_range_B_refined 2.812 r_long_range_B_other 2.812 r_mcangle_it 0.91 r_mcangle_other 0.91 r_angle_refined_deg 0.793 r_scangle_other 0.72 r_angle_other_deg 0.657 r_mcbond_it 0.495 r_mcbond_other 0.495 r_scbond_it 0.402 r_scbond_other 0.402 r_chiral_restr 0.049 r_bond_refined_d 0.004 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3783 Nucleic Acid Atoms Solvent Atoms 281 Heterogen Atoms 41
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling