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Crystal structure of binary complex Bud32-Cgi121 in complex with ADP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other Methanocaldococcus jannaschii Bud32/Cgi121
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 293 0.1 M Sodium Acetate pH 4.8,
2.0 M Ammonium Sulfate,
0.1 M NaCl, 10 mM Tris-HcL pH 7.5 and 5 mM ATP
Crystal Properties Matthews coefficient Solvent content 2.68 54.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 113.01 α = 90 b = 113.01 β = 90 c = 86.35 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2012-11-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.97911 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.951 35.74 99.9 0.055 25.08 7.34 289733 39488
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.951 2.021 98.96
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT Methanocaldococcus jannaschii Bud32/Cgi121 1.951 35.737 2 39480 1973 99.88 0.1805 0.179 0.1771 0.2092 0.2087
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.0786 -4.0786 8.1571
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 15.854 f_angle_d 0.991 f_chiral_restr 0.072 f_bond_d 0.005 f_plane_restr 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3206 Nucleic Acid Atoms Solvent Atoms 280 Heterogen Atoms 56
Software Software Software Name Purpose PHENIX refinement XDS data reduction