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Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 293 0.2M KSCN, 0.1M Tris-HAc pH7, 3.5-4.5%(w/v) PEG20K, 3.5-
4.5%(w/v) PEG550MME
Crystal Properties Matthews coefficient Solvent content 3.51 65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 214.21 α = 90 b = 457.45 β = 90 c = 639.66 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 PIXEL DECTRIS PILATUS 2M 2013-06-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9795 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.4 49.908 98.8 0.275 0.298 0.112 8.6 6.8 841002 841002
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.4 3.58 97.9 1.302 1.302 0.608 0.5 5 121152
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 3.4 49.908 841002 41975 98.54 0.2062 0.2044 0.2077 0.2412 0.2411 RANDOM 80.037
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.93 0.16 2.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.228 r_dihedral_angle_3_deg 21.499 r_dihedral_angle_4_deg 17.948 r_mcangle_it 12.446 r_dihedral_angle_1_deg 8.382 r_mcbond_it 7.605 r_mcbond_other 7.605 r_angle_refined_deg 1.615 r_angle_other_deg 1.28 r_chiral_restr 0.148
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.228 r_dihedral_angle_3_deg 21.499 r_dihedral_angle_4_deg 17.948 r_mcangle_it 12.446 r_dihedral_angle_1_deg 8.382 r_mcbond_it 7.605 r_mcbond_other 7.605 r_angle_refined_deg 1.615 r_angle_other_deg 1.28 r_chiral_restr 0.148 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 19157 Nucleic Acid Atoms 32502 Solvent Atoms Heterogen Atoms 42
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction