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The crystal structure of hemagglutinin form A/chicken/New York/14677-13/1998
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 293 0.2 M ammonium fluoride, 20% (w/v) PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.77 55.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 252.545 α = 90 b = 134.822 β = 113.23 c = 123.093 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2009-03-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 48 99 30.6 3.8 129493
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.5 48 122862 6504 98.86 0.21176 0.20997 0.2126 0.24617 0.2469 RANDOM 67.137
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 -0.83 1.76 -0.8
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.063 r_dihedral_angle_4_deg 19.21 r_dihedral_angle_3_deg 16.298 r_long_range_B_other 9.299 r_long_range_B_refined 9.298 r_dihedral_angle_1_deg 6.138 r_scangle_other 5.746 r_mcangle_other 5.231 r_mcangle_it 5.23 r_scbond_it 3.546
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.063 r_dihedral_angle_4_deg 19.21 r_dihedral_angle_3_deg 16.298 r_long_range_B_other 9.299 r_long_range_B_refined 9.298 r_dihedral_angle_1_deg 6.138 r_scangle_other 5.746 r_mcangle_other 5.231 r_mcangle_it 5.23 r_scbond_it 3.546 r_scbond_other 3.546 r_mcbond_it 3.288 r_mcbond_other 3.281 r_angle_refined_deg 1.601 r_angle_other_deg 1.499 r_chiral_restr 0.091 r_bond_refined_d 0.013 r_gen_planes_refined 0.009 r_bond_other_d 0.008 r_gen_planes_other 0.007 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 23168 Nucleic Acid Atoms Solvent Atoms 1024 Heterogen Atoms 238
Software Software Software Name Purpose REFMAC refinement