☰ Navigation Tabs
Crystal Structure of Bovine G Protein Coupled-Receptor Kinase 5 in Complex with CCG215022
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4PNK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 277 HEPES, ethylene glycol, PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.23 44.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.106 α = 90 b = 70.104 β = 90 c = 182.825 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2013-12-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 1.1271 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.42 50 99.9 0.136 42.3 37.7 24217 24217
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.42 2.46 100 0.936 4.1 34.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4PNK 2.42 24.47 22906 1235 99.56 0.19635 0.19379 0.1955 0.24297 0.2452 RANDOM 79.266
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.11 -0.33 0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.919 r_dihedral_angle_4_deg 18.411 r_dihedral_angle_3_deg 15.458 r_dihedral_angle_1_deg 6.44 r_long_range_B_refined 5.881 r_long_range_B_other 5.847 r_scangle_other 4.511 r_mcangle_it 3.392 r_mcangle_other 3.391 r_scbond_it 2.838
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.919 r_dihedral_angle_4_deg 18.411 r_dihedral_angle_3_deg 15.458 r_dihedral_angle_1_deg 6.44 r_long_range_B_refined 5.881 r_long_range_B_other 5.847 r_scangle_other 4.511 r_mcangle_it 3.392 r_mcangle_other 3.391 r_scbond_it 2.838 r_scbond_other 2.826 r_mcbond_it 2.264 r_mcbond_other 2.264 r_angle_refined_deg 1.483 r_angle_other_deg 0.805 r_chiral_restr 0.082 r_bond_refined_d 0.011 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4067 Nucleic Acid Atoms Solvent Atoms 37 Heterogen Atoms 42
Software Software Software Name Purpose REFMAC refinement HKL-2000 data scaling PHASER phasing