☰ Navigation Tabs
High pressure protein crystallography of hen egg white lysozyme at 0.1 MPa
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 293 sodium chloride
Crystal Properties Matthews coefficient Solvent content 2.07 40.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.197 α = 90 b = 79.197 β = 90 c = 37.9 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 IMAGE PLATE RIGAKU RAXIS VII 2013-02-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E SUPERBRIGHT 1.54178 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.54 50 99.4 47.3 7.8 18464
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.54 19.81 16645 897 95.3 0.1498 0.14829 0.1605 0.17882 0.1895 RANDOM 26.003
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.18 -0.18 0.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.353 r_dihedral_angle_4_deg 22.265 r_dihedral_angle_3_deg 14.498 r_long_range_B_refined 9.22 r_long_range_B_other 9.18 r_scangle_other 7.219 r_dihedral_angle_1_deg 5.912 r_scbond_it 4.56 r_scbond_other 4.558 r_mcangle_other 3.477
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.353 r_dihedral_angle_4_deg 22.265 r_dihedral_angle_3_deg 14.498 r_long_range_B_refined 9.22 r_long_range_B_other 9.18 r_scangle_other 7.219 r_dihedral_angle_1_deg 5.912 r_scbond_it 4.56 r_scbond_other 4.558 r_mcangle_other 3.477 r_mcangle_it 3.451 r_mcbond_it 2.343 r_mcbond_other 2.28 r_angle_refined_deg 2.141 r_angle_other_deg 1.035 r_chiral_restr 0.144 r_bond_refined_d 0.023 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 100 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement