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Crystal structure of DCoH2 S51T
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1RU0 PDB ENTRY 1RU0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 7.5 291 0.1M Tris, 8% PEG 8,000 mixing 0.5 ul protein and 1 ul reservoir
Crystal Properties Matthews coefficient Solvent content 2.34 47.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.729 α = 90 b = 57.729 β = 90 c = 115.064 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate focussing mirror 2011-08-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-BM 1.00 APS 22-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.36 25 97.8 0.059 58.1 10.7 48837 3 16.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.36 1.38 96.4 0.953 2.98 9.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE PDB ENTRY 1RU0 1.36 24.997 45081 2291 92.34 0.1587 0.1579 0.1515 0.1746 0.1693 Random 22
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.5014 1.5014 -3.0027
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 12.27 f_angle_d 1.045 f_chiral_restr 0.078 f_bond_d 0.006 f_plane_restr 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1547 Nucleic Acid Atoms Solvent Atoms 214 Heterogen Atoms
Software Software Software Name Purpose PHENIX refinement