☰ Navigation Tabs
Crystal Structure of TR3 LBD in complex with Molecule 3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.2 277 PEG4000, Sodium citrate, Glycerol
Crystal Properties Matthews coefficient Solvent content 3.21 61.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.551 α = 90 b = 76.807 β = 90 c = 128.944 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r mirrors 2014-03-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.98 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.18 50 97.8 0.081 12.9 4 39232
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.18 2.22 98.2 0.476 3.8 1965
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.18 37.26 37351 1807 96.55 0.1874 0.1851 0.1933 0.2347 0.2415 RANDOM 40.044
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.21 0.58 -0.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.628 r_dihedral_angle_4_deg 19.309 r_dihedral_angle_3_deg 18.83 r_dihedral_angle_1_deg 5.644 r_mcangle_it 5.213 r_mcbond_it 3.778 r_mcbond_other 3.778 r_angle_refined_deg 1.971 r_angle_other_deg 1.358 r_chiral_restr 0.132
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.628 r_dihedral_angle_4_deg 19.309 r_dihedral_angle_3_deg 18.83 r_dihedral_angle_1_deg 5.644 r_mcangle_it 5.213 r_mcbond_it 3.778 r_mcbond_other 3.778 r_angle_refined_deg 1.971 r_angle_other_deg 1.358 r_chiral_restr 0.132 r_bond_refined_d 0.02 r_gen_planes_refined 0.011 r_bond_other_d 0.007 r_gen_planes_other 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3639 Nucleic Acid Atoms Solvent Atoms 314 Heterogen Atoms 36
Software Software Software Name Purpose HKL-2000 data reduction REFMAC refinement PDB_EXTRACT data extraction Blu-Ice data collection Coot model building PHASER phasing HKL data scaling