☰ Navigation Tabs
STRUCTURE OF THE BINARY COMPLEX OF A ZINGIBER OFFICINALE DOUBLE BOND REDUCTASE IN COMPLEX WITH NADP MONOCLINIC CRYSTAL FORM
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4NH4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 PEG 1500 24%, PCB 100 mM
Crystal Properties Matthews coefficient Solvent content 2.57 52.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 131.704 α = 90 b = 133.447 β = 101.39 c = 90.942 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M mirrors 2014-02-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.968630 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.49 46.4 99.3 0.089 0.101 11.04 4.51 53557 53557 -3 59.919
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.49 2.58 99.1 0.998 1.125 1.74 4.61
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4NH4 2.6 46.4 44714 2374 99.4 0.2245 0.2223 0.2246 0.265 0.2629 RANDOM 49.76
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.56 -4.84 -0.28 3.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.551 r_dihedral_angle_4_deg 21.083 r_dihedral_angle_3_deg 15.616 r_dihedral_angle_1_deg 5.861 r_mcangle_it 5.365 r_angle_other_deg 3.775 r_mcbond_it 3.53 r_mcbond_other 3.528 r_angle_refined_deg 1.501 r_chiral_restr 0.082
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.551 r_dihedral_angle_4_deg 21.083 r_dihedral_angle_3_deg 15.616 r_dihedral_angle_1_deg 5.861 r_mcangle_it 5.365 r_angle_other_deg 3.775 r_mcbond_it 3.53 r_mcbond_other 3.528 r_angle_refined_deg 1.501 r_chiral_restr 0.082 r_bond_refined_d 0.011 r_gen_planes_other 0.007 r_gen_planes_refined 0.006 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10141 Nucleic Acid Atoms Solvent Atoms 146 Heterogen Atoms 192
Software Software Software Name Purpose XDS data reduction REFMAC refinement PDB_EXTRACT data extraction XSCALE data scaling PHASER phasing XSCALE data reduction