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The crystal structure of BshC from Bacillus subtilis complexed with citrate and ADP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 298 0.2 M tribasic sodium citrate, 10% PEG 3350, 7.5 mg/mL
Crystal Properties Matthews coefficient Solvent content 2.36 47.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.53 α = 90 b = 92.16 β = 116.83 c = 87.377 γ = 90
Symmetry Space Group I 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2014-08-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 1.0 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.77 26.8 99.4 0.068 11 4.6 56473
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.77 1.81 99 0.479 2.8 4.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.77 26.8 53595 2865 99.37 0.1696 0.168 0.1983 0.214 RANDOM 24.058
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.35 -0.95 -0.57 0.93
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.054 r_dihedral_angle_4_deg 18.91 r_dihedral_angle_3_deg 15.601 r_dihedral_angle_1_deg 5.958 r_mcangle_it 3.325 r_mcbond_it 2.475 r_mcbond_other 2.471 r_angle_refined_deg 1.673 r_angle_other_deg 0.829 r_chiral_restr 0.116
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.054 r_dihedral_angle_4_deg 18.91 r_dihedral_angle_3_deg 15.601 r_dihedral_angle_1_deg 5.958 r_mcangle_it 3.325 r_mcbond_it 2.475 r_mcbond_other 2.471 r_angle_refined_deg 1.673 r_angle_other_deg 0.829 r_chiral_restr 0.116 r_bond_refined_d 0.015 r_gen_planes_refined 0.012 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4352 Nucleic Acid Atoms Solvent Atoms 230 Heterogen Atoms 46
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction