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Structure of the luciferase-like enzyme from the nonluminescent Zophobas morio mealworm
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 291 100 mM HEPES, 200 mM ammonium chloride,
16% (w/v) PEG 6000
Crystal Properties Matthews coefficient Solvent content 2.31 46.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.774 α = 90 b = 91.005 β = 90 c = 110.294 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2013-04-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE W01B-MX2 1.456 LNLS W01B-MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 34.11 95.7 24.06 5 53794
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.05 34.11 50958 2736 95.47 0.1899 0.1876 0.2319 0.2114 RANDOM 24.862
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.01 2.18 -0.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.996 r_dihedral_angle_4_deg 15.189 r_dihedral_angle_3_deg 13.822 r_dihedral_angle_1_deg 5.531 r_mcangle_it 1.188 r_angle_refined_deg 1.033 r_mcbond_it 0.722 r_mcbond_other 0.722 r_angle_other_deg 0.699 r_chiral_restr 0.061
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.996 r_dihedral_angle_4_deg 15.189 r_dihedral_angle_3_deg 13.822 r_dihedral_angle_1_deg 5.531 r_mcangle_it 1.188 r_angle_refined_deg 1.033 r_mcbond_it 0.722 r_mcbond_other 0.722 r_angle_other_deg 0.699 r_chiral_restr 0.061 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6615 Nucleic Acid Atoms Solvent Atoms 396 Heterogen Atoms 46
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction SCALEPACK data scaling