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Crystal structure of XEG5A, a GH5 xyloglucan-specific endo-beta-1,4-glucanase from ruminal metagenomic library, in complex with glucose and TRIS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 291 PEG3350, PEG400, magnesium chloride
Crystal Properties Matthews coefficient Solvent content 3.39 63.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.95 α = 90 b = 96.95 β = 90 c = 95.785 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2014-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE W01B-MX2 1.459 LNLS W01B-MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.64 50 96.7 0.135 0.141 16.01 10.8 36412 -3 65.739
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.64 2.8 81.5 1.462
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.64 48.52 36412 1466 96.75 0.2157 0.2145 0.2363 0.1895 RANDOM 64.17
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.85 0.85 0.85 -2.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.23 r_dihedral_angle_4_deg 14.353 r_dihedral_angle_3_deg 11.191 r_dihedral_angle_1_deg 4.907 r_mcangle_it 2.37 r_mcbond_it 1.424 r_mcbond_other 1.424 r_angle_refined_deg 0.877 r_angle_other_deg 0.76 r_chiral_restr 0.079
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.23 r_dihedral_angle_4_deg 14.353 r_dihedral_angle_3_deg 11.191 r_dihedral_angle_1_deg 4.907 r_mcangle_it 2.37 r_mcbond_it 1.424 r_mcbond_other 1.424 r_angle_refined_deg 0.877 r_angle_other_deg 0.76 r_chiral_restr 0.079 r_bond_refined_d 0.004 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5380 Nucleic Acid Atoms Solvent Atoms 63 Heterogen Atoms 42
Software Software Software Name Purpose XDS data scaling REFMAC refinement PDB_EXTRACT data extraction MOLREP phasing XSCALE data scaling