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Glucose isomerase structure determined by serial femtosecond crystallography at SACLA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 8.5 278 40%(w/v) PEG4000, 0.2 M lithium sulfate, 0.1 M Tris-HCl
Crystal Properties Matthews coefficient Solvent content 2.8 56.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 94 α = 90 b = 100 β = 90 c = 103 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 CCD MPCCD 2013-10-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 FREE ELECTRON LASER SACLA BEAMLINE BL3 1.23 SACLA BL3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 30 99.9 3.6 85 33122
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2 29.98 31451 1675 99.95 0.16094 0.15905 0.1958 0.2429 RANDOM 24.684
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.15 -0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.401 r_dihedral_angle_4_deg 16.098 r_dihedral_angle_3_deg 12.516 r_long_range_B_refined 7.163 r_long_range_B_other 6.853 r_dihedral_angle_1_deg 5.665 r_scangle_other 4.733 r_scbond_it 3.051 r_scbond_other 3.045 r_mcangle_it 2.566
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.401 r_dihedral_angle_4_deg 16.098 r_dihedral_angle_3_deg 12.516 r_long_range_B_refined 7.163 r_long_range_B_other 6.853 r_dihedral_angle_1_deg 5.665 r_scangle_other 4.733 r_scbond_it 3.051 r_scbond_other 3.045 r_mcangle_it 2.566 r_mcangle_other 2.565 r_mcbond_it 1.886 r_mcbond_other 1.881 r_angle_refined_deg 1.713 r_angle_other_deg 0.912 r_chiral_restr 0.112 r_bond_refined_d 0.017 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3046 Nucleic Acid Atoms Solvent Atoms 339 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement