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PDE4D complexed with inhibitor
Crystallization Crystal Properties Matthews coefficient Solvent content 2.73 54.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.426 α = 90 b = 112.671 β = 90 c = 161.077 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 2007-01-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE OTHER 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 92.45 99.5 9 3.76 91831
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.2 92.45 87193 4591 99.38 0.23953 0.23729 0.2267 0.28116 RANDOM 41.823
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.72 -0.14 -0.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.221 r_dihedral_angle_3_deg 16.546 r_dihedral_angle_4_deg 16.076 r_dihedral_angle_1_deg 5.153 r_scangle_it 2.562 r_scbond_it 1.652 r_angle_refined_deg 1.261 r_mcangle_it 1.041 r_mcbond_it 0.608 r_nbtor_refined 0.294
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.221 r_dihedral_angle_3_deg 16.546 r_dihedral_angle_4_deg 16.076 r_dihedral_angle_1_deg 5.153 r_scangle_it 2.562 r_scbond_it 1.652 r_angle_refined_deg 1.261 r_mcangle_it 1.041 r_mcbond_it 0.608 r_nbtor_refined 0.294 r_symmetry_hbond_refined 0.218 r_nbd_refined 0.196 r_symmetry_vdw_refined 0.179 r_xyhbond_nbd_refined 0.132 r_chiral_restr 0.083 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10417 Nucleic Acid Atoms Solvent Atoms 473 Heterogen Atoms 120
Software Software Software Name Purpose REFMAC refinement