4V9G | pdb_00004v9g

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	4V9G

Crystalization Experiments
ID	Method	pH	Temperature	Details
1		10.5	292	The core dimer complex was concentrated to an optical density of ~100 at 875 nm and washed in (0.42%) n-nonyl- -D maltopyranoside to exchange the purification detergent, n-dodecyl- -D-maltopyranoside. Crystals grew in 14.00% PEG400, 0.10 M N-cyclohexyl-3-aminopropanesulfonic acid (CAPS) pH 10.5, and 1.0% spermidine., VAPOR DIFFUSION, SITTING DROP, temperature 292K

Crystal Properties
Matthews coefficient	Solvent content
3.66	66.36

Symmetry
Space Group	P 1 21 1

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	ADSC QUANTUM 4	SI(111) SINGLE CRYSTAL MONOCHROMATOR AND VERTICALLY FOCUSSING SI CRYSTAL MIRROR		M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SRS BEAMLINE PX9.6		SRS	PX9.6

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	7.78	20.39	82	0.093	5.6	2.9		6831

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	7.78	8.4	80		0.905	1	2.9

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	7.78	20.39	5997	311	73.65	0.22939	0.22793	0.2356	0.25767	0.2692	RANDOM	250.037

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-138.15		-153.97	76.04		62.11

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	33.257
r_dihedral_angle_3_deg	24.091
r_dihedral_angle_4_deg	16.224
r_dihedral_angle_1_deg	8.762
r_angle_refined_deg	2.63
r_chiral_restr	0.083
r_bond_refined_d	0.013
r_gen_planes_refined	0.008
r_bond_other_d
r_angle_other_deg

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	33.257
r_dihedral_angle_3_deg	24.091
r_dihedral_angle_4_deg	16.224
r_dihedral_angle_1_deg	8.762
r_angle_refined_deg	2.63
r_chiral_restr	0.083
r_bond_refined_d	0.013
r_gen_planes_refined	0.008
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_it
r_mcbond_other
r_mcangle_it
r_mcangle_other
r_scbond_it
r_scbond_other
r_scangle_it
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	17267
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms	1826