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The Crystallographic Structure of Panicum Mosaic Virus
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1C8N PDB ENTRY 1C8N
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 291 10% PEG400, 0.1 M citric acid, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.79 56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 411.74 α = 90 b = 403.9 β = 89.65 c = 412.46 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2004-02-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 1.000 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.71 50.01 63 0.136 6.8 3.14 2279719 73.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.71 2.81 4.9 0.346 2.5 2.26 17607
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1C8N 2.9 50.01 2217465 2217465 221945 74.9 0.255 0.255 0.251 0.2331 0.285 0.2662 RANDOM 73.5442
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.206 12.232 -8.217 8.423
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 24.42 c_scangle_it 17.95 c_scbond_it 12.95 c_mcangle_it 8.97 c_mcbond_it 5.48 c_angle_deg 1.41 c_improper_angle_d 1.033 c_bond_d 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 54612 Nucleic Acid Atoms 4188 Solvent Atoms Heterogen Atoms 12
Software Software Software Name Purpose d*TREK data scaling CNS refinement PDB_EXTRACT data extraction ADSC data collection d*TREK data reduction CNS phasing