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Crystal structure of a translation termination complex formed with release factor RF2.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3D5A PDB ENTRIES 3D5A, 3D5B, 3D5C, 3D5D experimental model PDB 3D5B PDB ENTRIES 3D5A, 3D5B, 3D5C, 3D5D experimental model PDB 3D5C PDB ENTRIES 3D5A, 3D5B, 3D5C, 3D5D experimental model PDB 3D5D PDB ENTRIES 3D5A, 3D5B, 3D5C, 3D5D
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 296 100 MM TRIS-OAC, 200 MM KSCN, 3.5-4.5 % (W/V) PEG20K, 4-9 % PEG200, DEOXY BIGCHAP, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 296K
Crystal Properties Matthews coefficient Solvent content 3.45 64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 211.24 α = 90 b = 456.78 β = 90 c = 618.71 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD SI(111) DOUBLE CRYSTAL MONOCHROMATOR. ADJUSTABLE FOCUSING MIRRORS IN K-B GEOMETRY 2008-04-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 49.951 97.9 8.8 16.8 1148216
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.11 89.9 2.4 8.4
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION PDB ENTRIES 3D5A, 3D5B, 3D5C, 3D5D 3 49.951 1.99 1148216 10481 97.34 0.2806 0.2803 0.2738 0.3164 0.3071
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 21920 Nucleic Acid Atoms 35826 Solvent Atoms Heterogen Atoms 528
Software Software Software Name Purpose PHENIX refinement CNS refinement XDS data reduction XDS data scaling CNS phasing