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Structure of the Phage P2 Baseplate in its Activated Conformation with Ca
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2X53 PDB ENTRY 2X53
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 20C, PROTEIN 4 MG/ML. 3.3% PEG 8000 IN 33 MM TRIS PH 8.5, 130 MM CA ACETATE, 66 MM LI SULFATE, AND 66 MM IMIDAZOLE.
Crystal Properties Matthews coefficient Solvent content 5.6 77.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 219.521 α = 90 b = 219.337 β = 90.02 c = 392.432 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 5.464 44.6 91.4 0.07 12.3 4.2 112351 200
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 5.464 5.8 87.2 0.46 2.8 3.9
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 2X53 5.464 44.563 1.35 112191 5615 91 0.2912 0.2908 0.2923 0.2974 0.2944
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 35.9922 0.2241 27.8547 -63.8469
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 19.03 f_angle_d 1.672 f_chiral_restr 0.13 f_bond_d 0.01 f_plane_restr 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 59736 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 6
Software Software Software Name Purpose PHASER model building PHENIX refinement XDS data reduction SCALA data scaling PHASER phasing