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Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2J00 PDB ENTRIES 2J00, 2J01, 2J02, 2J03 experimental model PDB 2J01 PDB ENTRIES 2J00, 2J01, 2J02, 2J03 experimental model PDB 2J02 PDB ENTRIES 2J00, 2J01, 2J02, 2J03 experimental model PDB 2J03 PDB ENTRIES 2J00, 2J01, 2J02, 2J03
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 COMPARE SELMER ET AL SCIENCE 2006, pH 7.0
Crystal Properties Matthews coefficient Solvent content 3.38 63.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 212.414 α = 90 b = 450.107 β = 90 c = 630.54 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC 2006-11-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.5 50 96.7 0.3 3.8 6.2 727953 1.6 24
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.5 3.7 88.8 0.73 1.6 5.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRIES 2J00, 2J01, 2J02, 2J03 3.5 20 740306 33920 98.9 0.265 0.265 0.2592 0.326 0.3182 RANDOM 89.6
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.57 -7.84 11.41
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 28.8 c_improper_angle_d 1.48 c_angle_deg 1.2 c_bond_d 0.007 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 28.8 c_improper_angle_d 1.48 c_angle_deg 1.2 c_bond_d 0.007 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot c_mcbond_it c_mcangle_it c_scbond_it c_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 20635 Nucleic Acid Atoms 34562 Solvent Atoms Heterogen Atoms 743
Software Software Software Name Purpose Coot model building CNS refinement XDS data reduction XDS data scaling CNS phasing