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Designed armadillo repeat protein with 5 internal repeats, 2nd generation C-cap and 3rd generation N-cap.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4DB6 PDB ENTRY 4DB6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 15 % PEG 4000 0.2 M CA-ACETATE 0.1 M NA-ACETATE, PH 5.5
Crystal Properties Matthews coefficient Solvent content 2.39 48.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.586 α = 90 b = 102.586 β = 90 c = 111.107 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2011-08-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 55.55 94.3 0.1 12.2 7.8 76669
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 94.3 0.75 2.6 7.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4DB6 2 111.11 72765 3859 98.74 0.17065 0.16786 0.1786 0.22426 0.2297 RANDOM 35.208
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.95 -0.95 1.9
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.199 r_dihedral_angle_4_deg 18.042 r_dihedral_angle_3_deg 17.146 r_dihedral_angle_1_deg 5.389 r_scbond_it 3.89 r_mcangle_it 3.499 r_mcbond_it 2.466 r_mcbond_other 2.464 r_angle_refined_deg 1.711 r_angle_other_deg 0.982
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.199 r_dihedral_angle_4_deg 18.042 r_dihedral_angle_3_deg 17.146 r_dihedral_angle_1_deg 5.389 r_scbond_it 3.89 r_mcangle_it 3.499 r_mcbond_it 2.466 r_mcbond_other 2.464 r_angle_refined_deg 1.711 r_angle_other_deg 0.982 r_chiral_restr 0.098 r_bond_refined_d 0.017 r_gen_planes_refined 0.009 r_gen_planes_other 0.004 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8573 Nucleic Acid Atoms Solvent Atoms 767 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHENIX phasing