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STRUCTURE OF THE WNT DEACYLASE NOTUM FROM DROSOPHILA - CRYSTAL FORM I - 2.4A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 0.12 M ALCOHOLS, 0.1 M TRIS/BICINE 8.5, 30 % EDO_P8K
Crystal Properties Matthews coefficient Solvent content 2.4 49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.388 α = 90 b = 81.394 β = 105.54 c = 86.945 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2014-02-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 58 98.9 0.05 13.8 3 30929 -3 53
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 2.4 83.77 29879 1030 98.71 0.19842 0.19685 0.1988 0.24338 0.2364 RANDOM 67.106
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.07 3.07 -3.79 1.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.99 r_dihedral_angle_4_deg 19.03 r_dihedral_angle_3_deg 16.448 r_dihedral_angle_1_deg 6.313 r_mcangle_it 3.741 r_scbond_it 3.031 r_mcbond_it 2.355 r_mcbond_other 2.354 r_angle_refined_deg 1.494 r_angle_other_deg 0.813
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.99 r_dihedral_angle_4_deg 19.03 r_dihedral_angle_3_deg 16.448 r_dihedral_angle_1_deg 6.313 r_mcangle_it 3.741 r_scbond_it 3.031 r_mcbond_it 2.355 r_mcbond_other 2.354 r_angle_refined_deg 1.494 r_angle_other_deg 0.813 r_chiral_restr 0.084 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5469 Nucleic Acid Atoms Solvent Atoms 14 Heterogen Atoms 14
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling