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Crystal Structure of AauDyP Complexed with Imidazole
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4AU9 PDB ENTRY 4AU9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 30% MPD, 10% PEG 4000, 100 MM IMIDAZOLE-HCL PH 8.0
Crystal Properties Matthews coefficient Solvent content 2.12 42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.33 α = 90 b = 45.71 β = 91.61 c = 140.47 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2013-10-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 47.5 99.2 0.11 9.31 3.5 50456 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.22 95.8 0.39 2.72 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4AU9 2.1 47.51 47912 2523 99.25 0.18239 0.17949 0.1802 0.23867 0.2404 RANDOM 22.348
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.072 r_dihedral_angle_4_deg 20.225 r_dihedral_angle_3_deg 12.779 r_dihedral_angle_1_deg 7.275 r_mcangle_it 2.246 r_scbond_it 2.153 r_mcbond_it 1.581 r_angle_refined_deg 0.763 r_chiral_restr 0.065 r_gen_planes_refined 0.009
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.072 r_dihedral_angle_4_deg 20.225 r_dihedral_angle_3_deg 12.779 r_dihedral_angle_1_deg 7.275 r_mcangle_it 2.246 r_scbond_it 2.153 r_mcbond_it 1.581 r_angle_refined_deg 0.763 r_chiral_restr 0.065 r_gen_planes_refined 0.009 r_bond_refined_d 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6610 Nucleic Acid Atoms Solvent Atoms 532 Heterogen Atoms 363
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing