☰ Navigation Tabs
Leishmania major Thymidine Kinase in complex with dTTP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 50 MM HEPES PH 8.0, 36% (W/V) PENTA-ERYTHRITOL-PROPOXYLATE, 1 MM DTTP, 3 MM MGCL2
Crystal Properties Matthews coefficient Solvent content 2.26 45.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.6 α = 81.07 b = 61.63 β = 85.8 c = 110.09 γ = 74.94
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2013-02-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 59.54 94.7 0.14 6.2 2 29290 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.16 94.7 0.6 2.1 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3 108.69 27884 1404 94.7 0.26118 0.2603 0.2599 0.27837 0.2762 RANDOM 45.128
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.26 1.01 -2.72 -0.39 -0.69 0.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.447 r_dihedral_angle_3_deg 15.625 r_dihedral_angle_4_deg 13.882 r_dihedral_angle_1_deg 5.904 r_long_range_B_refined 4.957 r_long_range_B_other 4.94 r_scangle_other 2.757 r_mcangle_it 2.417 r_mcangle_other 2.416 r_scbond_it 1.94
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.447 r_dihedral_angle_3_deg 15.625 r_dihedral_angle_4_deg 13.882 r_dihedral_angle_1_deg 5.904 r_long_range_B_refined 4.957 r_long_range_B_other 4.94 r_scangle_other 2.757 r_mcangle_it 2.417 r_mcangle_other 2.416 r_scbond_it 1.94 r_scbond_other 1.917 r_angle_refined_deg 1.445 r_mcbond_it 1.424 r_mcbond_other 1.424 r_angle_other_deg 1.218 r_chiral_restr 0.066 r_bond_refined_d 0.009 r_bond_other_d 0.006 r_gen_planes_refined 0.006 r_gen_planes_other 0.005 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9673 Nucleic Acid Atoms Solvent Atoms 53 Heterogen Atoms 232
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction Aimless data scaling PHASER phasing