4UUG

The (R)-selective amine transaminase from Aspergillus fumigatus with inhibitor bound


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4CHIPDB ENTRY 4CHI

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
14.62.0 M SODIUM FORMATE, 0.1 M SODIUM ACETATE PH 4.6
Crystal Properties
Matthews coefficientSolvent content
469.3

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 144.449α = 90
b = 144.449β = 90
c = 96.112γ = 120
Symmetry
Space GroupP 31 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6MMIRROR2014-04-30MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.1BESSY14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.647.2899.90.0616.14.5151504226.7
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.61.6399.80.672.34.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 4CHI1.647.25143859761499.840.134480.133760.14811RANDOM21
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.160.080.16-0.53
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.234
r_dihedral_angle_4_deg15.181
r_dihedral_angle_3_deg13.577
r_dihedral_angle_1_deg5.744
r_scbond_it2.107
r_mcangle_it1.983
r_angle_refined_deg1.68
r_mcbond_it1.306
r_mcbond_other1.306
r_angle_other_deg0.876
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.234
r_dihedral_angle_4_deg15.181
r_dihedral_angle_3_deg13.577
r_dihedral_angle_1_deg5.744
r_scbond_it2.107
r_mcangle_it1.983
r_angle_refined_deg1.68
r_mcbond_it1.306
r_mcbond_other1.306
r_angle_other_deg0.876
r_chiral_restr0.104
r_bond_refined_d0.014
r_gen_planes_other0.01
r_gen_planes_refined0.009
r_bond_other_d0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_it
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5050
Nucleic Acid Atoms
Solvent Atoms794
Heterogen Atoms85

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing