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Burkholderia pseudomallei heptokinase WcbL,AMPPNP (ATP analogue) complex.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 0.5 M NACL, 10 MM HEPES PH 7, 25 MM AMPPNP
Crystal Properties Matthews coefficient Solvent content 3.21 61.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.44 α = 90 b = 115.02 β = 90 c = 166.78 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2014-05-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.93 76.08 99.6 0.08 12.8 6.5 72694
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.93 1.98 96.7 0.79 2.1 6.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.93 76.08 68961 3690 99.61 0.19637 0.19399 0.1944 0.2416 0.242 RANDOM 32.427
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.08 -1.62 1.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.022 r_dihedral_angle_4_deg 16.522 r_dihedral_angle_3_deg 14.688 r_scbond_it 5.37 r_mcangle_it 5.306 r_dihedral_angle_1_deg 5.053 r_mcbond_it 4.311 r_angle_refined_deg 1.323 r_chiral_restr 0.086 r_bond_refined_d 0.009
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.022 r_dihedral_angle_4_deg 16.522 r_dihedral_angle_3_deg 14.688 r_scbond_it 5.37 r_mcangle_it 5.306 r_dihedral_angle_1_deg 5.053 r_mcbond_it 4.311 r_angle_refined_deg 1.323 r_chiral_restr 0.086 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5306 Nucleic Acid Atoms Solvent Atoms 606 Heterogen Atoms 76
Software Software Software Name Purpose xia2 data reduction XDS data reduction Aimless data scaling SHELX phasing ARP/wARP phasing REFMAC refinement