X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1G3UPDB ENTRY 1G3U

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.6453.85

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 75.459α = 90
b = 75.459β = 90
c = 71.579γ = 120
Symmetry
Space GroupP 32

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRIGAKU CCDMIRRORS2009-10-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU FR-E

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.365.498.90.16.74.3200112
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.32.3897.90.382.54.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1G3U2.365.361899698798.540.176480.174690.21289RANDOM41.485
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
6.726.72-13.44
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.982
r_dihedral_angle_4_deg22.003
r_dihedral_angle_3_deg15.475
r_dihedral_angle_1_deg5.335
r_scangle_it3.478
r_scbond_it2.14
r_angle_refined_deg1.347
r_mcangle_it1.307
r_angle_other_deg0.902
r_mcbond_it0.712
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.982
r_dihedral_angle_4_deg22.003
r_dihedral_angle_3_deg15.475
r_dihedral_angle_1_deg5.335
r_scangle_it3.478
r_scbond_it2.14
r_angle_refined_deg1.347
r_mcangle_it1.307
r_angle_other_deg0.902
r_mcbond_it0.712
r_mcbond_other0.153
r_chiral_restr0.072
r_bond_refined_d0.014
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2736
Nucleic Acid Atoms
Solvent Atoms173
Heterogen Atoms47

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
AMoREphasing