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Native structure of Farnesyl Pyrophosphate Synthase from Pseudomonas aeruginosa PA01, with bound ibandronic acid molecules.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 0.2 M MGCL2, 20% PEG6000, 0.1 M TRIS CL PH 8
Crystal Properties Matthews coefficient Solvent content 2.4 49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.31 α = 90 b = 98.55 β = 90 c = 131.32 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 2011-07-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 65.67 98.8 0.1 7.9 4.3 46925 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.95 94.5 0.53 1.8 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 1.85 65.66 44413 2365 98.48 0.20178 0.19964 0.2084 0.24269 0.2484 RANDOM 25.98
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.96 -0.73 -0.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.673 r_dihedral_angle_4_deg 20.992 r_dihedral_angle_3_deg 13.014 r_dihedral_angle_1_deg 5.321 r_scbond_it 3.228 r_mcangle_it 2.883 r_mcbond_it 2.038 r_mcbond_other 2.038 r_angle_refined_deg 1.764 r_angle_other_deg 1.661
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.673 r_dihedral_angle_4_deg 20.992 r_dihedral_angle_3_deg 13.014 r_dihedral_angle_1_deg 5.321 r_scbond_it 3.228 r_mcangle_it 2.883 r_mcbond_it 2.038 r_mcbond_other 2.038 r_angle_refined_deg 1.764 r_angle_other_deg 1.661 r_chiral_restr 0.101 r_bond_refined_d 0.016 r_gen_planes_refined 0.009 r_gen_planes_other 0.007 r_bond_other_d 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4049 Nucleic Acid Atoms Solvent Atoms 570 Heterogen Atoms 104
Software Software Software Name Purpose REFMAC refinement SCALA data scaling