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Crystal structure of the DNA binding domain of CpxR from E. coli
Crystallization Crystal Properties Matthews coefficient Solvent content 2.32 46.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.119 α = 89.8 b = 39.88 β = 75.13 c = 40.94 γ = 61.04
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.15 34.54 92 0.03 15.3 2 73642
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.15 1.21 76 0.33 2.4 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.15 33.6 64389 3396 92.05 0.12932 0.1279 0.1411 0.15599 0.1663 RANDOM 15.038
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.24 0.2 -1.01 -0.24 0.6 0.13
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 36.964 r_dihedral_angle_2_deg 31.715 r_dihedral_angle_4_deg 22.42 r_sphericity_bonded 13.796 r_dihedral_angle_3_deg 10.51 r_rigid_bond_restr 7.263 r_dihedral_angle_1_deg 6.194 r_angle_refined_deg 1.956 r_angle_other_deg 1.344 r_chiral_restr 0.125
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 36.964 r_dihedral_angle_2_deg 31.715 r_dihedral_angle_4_deg 22.42 r_sphericity_bonded 13.796 r_dihedral_angle_3_deg 10.51 r_rigid_bond_restr 7.263 r_dihedral_angle_1_deg 6.194 r_angle_refined_deg 1.956 r_angle_other_deg 1.344 r_chiral_restr 0.125 r_bond_refined_d 0.022 r_gen_planes_refined 0.013 r_bond_other_d 0.007 r_gen_planes_other 0.005 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1622 Nucleic Acid Atoms Solvent Atoms 393 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing