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Thermostabilised HUMAN A2a Receptor with CGS21680 bound
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2YDO PDB ENTRY 2YDO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.1M ADA, PH7.0, 21.6% PEG 600, 10% CHS
Crystal Properties Matthews coefficient Solvent content 2.3 51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.253 α = 90 b = 105.944 β = 90 c = 125.861 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 54.1 99.2 0.19 9.4 9.7 24037 2.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.74 99 1.04 2.3 9.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2YDO 2.6 125.86 22761 1234 98.94 0.24016 0.2385 0.2357 0.27116 0.2671 RANDOM 39.63
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.84 -0.12 -1.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.324 r_dihedral_angle_4_deg 19.949 r_dihedral_angle_3_deg 15.247 r_dihedral_angle_1_deg 4.349 r_angle_refined_deg 1.025 r_chiral_restr 0.073 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.324 r_dihedral_angle_4_deg 19.949 r_dihedral_angle_3_deg 15.247 r_dihedral_angle_1_deg 4.349 r_angle_refined_deg 1.025 r_chiral_restr 0.073 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4404 Nucleic Acid Atoms Solvent Atoms 16 Heterogen Atoms 122
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling