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Crystal structure of a neutralizing human monoclonal antibody with 1968 H3 HA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 293 20% PEG 3000, 100mM Na Citrate
Crystal Properties Matthews coefficient Solvent content 3.32 62.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 128.7 α = 90 b = 128.7 β = 90 c = 428.319 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 300 mm plate 2011-06-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.5 50 99.5 1.7 3.7 94551
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.5 50 94551 4962 99.33 0.21469 0.21247 0.2158 0.25755 0.2546 RANDOM 116.11
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.61 -0.3 -0.61 1.97
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.998 r_dihedral_angle_3_deg 18.177 r_dihedral_angle_4_deg 16.006 r_long_range_B_refined 13.932 r_long_range_B_other 13.932 r_scangle_other 9 r_mcangle_it 8.94 r_mcangle_other 8.94 r_dihedral_angle_1_deg 6.984 r_mcbond_it 5.453
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.998 r_dihedral_angle_3_deg 18.177 r_dihedral_angle_4_deg 16.006 r_long_range_B_refined 13.932 r_long_range_B_other 13.932 r_scangle_other 9 r_mcangle_it 8.94 r_mcangle_other 8.94 r_dihedral_angle_1_deg 6.984 r_mcbond_it 5.453 r_mcbond_other 5.452 r_scbond_it 5.378 r_scbond_other 5.378 r_angle_refined_deg 1.675 r_angle_other_deg 1.241 r_chiral_restr 0.12 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_bond_other_d 0.006 r_gen_planes_other 0.005 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 42604 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 482
Software Software Software Name Purpose REFMAC refinement