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Hexameric HIV-1 CA in Complex with BI-2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3H47
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 290 12% w/v PEG 4K, 0.1 M TRIS pH 8.5, 3% v/v ethylene glycol
Crystal Properties Matthews coefficient Solvent content 2.65 53.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.88 α = 90 b = 90.88 β = 90 c = 56.58 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2013-11-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E SUPERBRIGHT 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.21 14.87 93.4 0.177 0.096 0.986 7.2 3.9 12460
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.21 2.28 72.5 0.499 0.294 0.476 3 3.4 897
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3H47 2.22 14.87 12457 593 93.76 0.2431 0.2418 0.2468 0.2701 0.2753 RANDOM 36.167
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.28 0.14 0.28 -0.92
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.744 r_dihedral_angle_4_deg 13.44 r_dihedral_angle_3_deg 10.817 r_mcangle_it 4.774 r_dihedral_angle_1_deg 4.544 r_mcbond_it 3.434 r_mcbond_other 3.434 r_angle_refined_deg 0.918 r_angle_other_deg 0.697 r_chiral_restr 0.047
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.744 r_dihedral_angle_4_deg 13.44 r_dihedral_angle_3_deg 10.817 r_mcangle_it 4.774 r_dihedral_angle_1_deg 4.544 r_mcbond_it 3.434 r_mcbond_other 3.434 r_angle_refined_deg 0.918 r_angle_other_deg 0.697 r_chiral_restr 0.047 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1558 Nucleic Acid Atoms Solvent Atoms 76 Heterogen Atoms 26
Software Software Software Name Purpose Aimless data scaling PDB_EXTRACT data extraction PHASER phasing REFMAC refinement iMOSFLM data reduction