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Hexameric HIV-1 CA in complex with CPSF6 peptide, P6 crystal form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3H47 PDB entry 3H47
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 290 0.6M sodium potassium tartrate tetrahydrate, 0.1M TRIS
Crystal Properties Matthews coefficient Solvent content 2.55 51.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.549 α = 90 b = 91.549 β = 90 c = 57.001 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2012-07-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.96860 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 79.284 100 0.266 4.6 7.3 17251 17251
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.16 100 0.973 0.973 0.419 0.3 6.8 2528
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 3H47 2.05 79.28 17072 864 98.92 0.2147 0.2128 0.2176 0.2525 0.262 RANDOM 27.74
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.04 -0.02 -0.04 0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.327 r_dihedral_angle_4_deg 15.262 r_dihedral_angle_3_deg 11.181 r_dihedral_angle_1_deg 4.351 r_mcangle_it 2.647 r_mcbond_it 1.619 r_mcbond_other 1.619 r_angle_refined_deg 0.83 r_angle_other_deg 0.707 r_chiral_restr 0.047
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.327 r_dihedral_angle_4_deg 15.262 r_dihedral_angle_3_deg 11.181 r_dihedral_angle_1_deg 4.351 r_mcangle_it 2.647 r_mcbond_it 1.619 r_mcbond_other 1.619 r_angle_refined_deg 0.83 r_angle_other_deg 0.707 r_chiral_restr 0.047 r_bond_refined_d 0.004 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1698 Nucleic Acid Atoms Solvent Atoms 147 Heterogen Atoms 1
Software Software Software Name Purpose SCALA data scaling PDB_EXTRACT data extraction PHASER phasing REFMAC refinement iMOSFLM data reduction MOSFLM data reduction