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An Ligand-observed Mass Spectrometry-based Approach Integrated into the Fragment Based Lead Discovery Pipeline
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 289 PEG4000, Dithiothreitol, 2-(N-morpholino)ethanesulfonic acid, Glycerin
Crystal Properties Matthews coefficient Solvent content 2.6 52.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.177 α = 90 b = 102.077 β = 90 c = 251.875 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS HTC 2012-05-23 M LAUE
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5415
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.78 50 95 25.8 6.2 66889
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.78 45.69 60467 3228 95.2 0.22328 0.21958 0.2238 0.29365 0.2952 RANDOM 33.227
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.256 r_dihedral_angle_3_deg 18.456 r_dihedral_angle_4_deg 17.001 r_dihedral_angle_1_deg 6.714 r_long_range_B_refined 4.564 r_long_range_B_other 4.564 r_scangle_other 3.094 r_mcangle_it 3.044 r_mcangle_other 3.044 r_scbond_it 1.879
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.256 r_dihedral_angle_3_deg 18.456 r_dihedral_angle_4_deg 17.001 r_dihedral_angle_1_deg 6.714 r_long_range_B_refined 4.564 r_long_range_B_other 4.564 r_scangle_other 3.094 r_mcangle_it 3.044 r_mcangle_other 3.044 r_scbond_it 1.879 r_scbond_other 1.877 r_mcbond_it 1.871 r_mcbond_other 1.87 r_angle_refined_deg 1.544 r_angle_other_deg 0.84 r_chiral_restr 0.079 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 16888 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 40
Software Software Software Name Purpose HKL-3000 data collection HKL-3000 data extraction HKL-3000 data processing HKL-3000 data reduction HKL-3000 data scaling MOLREP phasing REFMAC refinement REFMAC refinement