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The Fk1 domain of FKBP51 in complex with iFit4
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 28 % PEG-3350, 0.2 M NH4-acetate and 0.1 M HEPES-NaOH pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.04 39.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.262 α = 90 b = 60.934 β = 90 c = 38.059 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2011-06-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.979 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.25 38.32 92.4 0.046 0.046 0.053 0.027 15.8 3.5 29892 29892 8.392
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.25 1.32 63.7 0.406 0.406 0.298 1.9 2.5 2935
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4TW6 1.25 20 29859 1523 92.07 0.1313 0.1289 0.1287 0.1743 0.1739 RANDOM 13.462
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.44 -0.34 -0.11
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 36.563 r_dihedral_angle_2_deg 30.163 r_dihedral_angle_4_deg 15.735 r_sphericity_bonded 11.63 r_dihedral_angle_3_deg 11.466 r_dihedral_angle_1_deg 8.362 r_rigid_bond_restr 5.046 r_angle_refined_deg 2.209 r_angle_other_deg 0.921 r_chiral_restr 0.134
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 36.563 r_dihedral_angle_2_deg 30.163 r_dihedral_angle_4_deg 15.735 r_sphericity_bonded 11.63 r_dihedral_angle_3_deg 11.466 r_dihedral_angle_1_deg 8.362 r_rigid_bond_restr 5.046 r_angle_refined_deg 2.209 r_angle_other_deg 0.921 r_chiral_restr 0.134 r_bond_refined_d 0.022 r_gen_planes_refined 0.012 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 969 Nucleic Acid Atoms Solvent Atoms 215 Heterogen Atoms 58
Software Software Software Name Purpose SCALA data scaling MOLREP phasing PDB_EXTRACT data extraction REFMAC refinement XDS data reduction XSCALE data reduction