☰ Navigation Tabs
Crystal structure of ATAD2A bromodomain complexed with H4(1-20)K5Ac peptide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 278 0.1M Ammonium Acetate, 100mM Bis-Tris pH5.5, 15-20% (w/v) PEG 10000
Crystal Properties Matthews coefficient Solvent content 2.92 57.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.55 α = 90 b = 77.55 β = 90 c = 62.44 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 193 CCD ADSC QUANTUM 315r 2013-08-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.11587 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 77.55 100 0.118 0.031 1 16.2 15.2 7014
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.6 100 1.042 0.326 0.82 2.2 10.9 763
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 54.84 6984 691 99.97 0.2244 0.2197 0.2306 0.2672 0.2609 RANDOM 39.88
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.63 0.63 -1.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.116 r_dihedral_angle_4_deg 13.231 r_dihedral_angle_3_deg 12.43 r_dihedral_angle_1_deg 4.162 r_mcangle_it 1.788 r_mcbond_it 1.017 r_mcbond_other 1.01 r_angle_refined_deg 0.775 r_angle_other_deg 0.675 r_chiral_restr 0.042
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.116 r_dihedral_angle_4_deg 13.231 r_dihedral_angle_3_deg 12.43 r_dihedral_angle_1_deg 4.162 r_mcangle_it 1.788 r_mcbond_it 1.017 r_mcbond_other 1.01 r_angle_refined_deg 0.775 r_angle_other_deg 0.675 r_chiral_restr 0.042 r_bond_refined_d 0.005 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1125 Nucleic Acid Atoms Solvent Atoms 29 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement Blu-Ice data collection Aimless data scaling iMOSFLM data reduction PDB_EXTRACT data extraction MOLREP phasing