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Mouse iodothyronine deiodinase 3 catalytic core, active site mutant SeCys->Cys
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TR3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 20 % PEG 3350, 0.2 M Ammoniumcitrate
Crystal Properties Matthews coefficient Solvent content 2.1 41.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.807 α = 90 b = 54.188 β = 90 c = 66.493 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2008-10-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.9797 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.93 50 98.5 0.086 11.9 5.7 13799
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.93 2 89.5 0.348 1214
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4tr3 1.93 42 13599 680 98.56 0.1933 0.1912 0.1893 0.2341 0.2296 RANDOM 16.364
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.41 -0.55 -0.86
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.428 r_dihedral_angle_4_deg 16.176 r_dihedral_angle_3_deg 13.523 r_dihedral_angle_1_deg 6.297 r_scangle_it 3.803 r_scbond_it 2.41 r_mcangle_it 1.739 r_angle_refined_deg 1.523 r_mcbond_it 0.986 r_chiral_restr 0.112
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.428 r_dihedral_angle_4_deg 16.176 r_dihedral_angle_3_deg 13.523 r_dihedral_angle_1_deg 6.297 r_scangle_it 3.803 r_scbond_it 2.41 r_mcangle_it 1.739 r_angle_refined_deg 1.523 r_mcbond_it 0.986 r_chiral_restr 0.112 r_bond_refined_d 0.015 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1461 Nucleic Acid Atoms Solvent Atoms 114 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement MOLREP phasing