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Mouse iodothyronine deiodinase 3 catalytic core, SeMet-labeled active site mutant SeCys->Cys
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 293 20 % PEG 3350, 0.2 M Ammoniumcitrate
Crystal Properties Matthews coefficient Solvent content 2.08 40.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.92 α = 90 b = 54.3 β = 90 c = 66.61 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2008-11-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9795 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 20 96 0.075 13.9 3.7 14304 14015
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.9 42.07 14015 706 95.95 0.1885 0.1866 0.2272 0.2103 RANDOM 18
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.27 -0.54 -0.73
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.065 r_dihedral_angle_4_deg 16.055 r_dihedral_angle_3_deg 13.826 r_dihedral_angle_1_deg 5.862 r_scangle_it 4.236 r_scbond_it 2.721 r_mcangle_it 1.797 r_angle_refined_deg 1.395 r_mcbond_it 0.971 r_chiral_restr 0.098
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.065 r_dihedral_angle_4_deg 16.055 r_dihedral_angle_3_deg 13.826 r_dihedral_angle_1_deg 5.862 r_scangle_it 4.236 r_scbond_it 2.721 r_mcangle_it 1.797 r_angle_refined_deg 1.395 r_mcbond_it 0.971 r_chiral_restr 0.098 r_bond_refined_d 0.015 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1462 Nucleic Acid Atoms Solvent Atoms 93 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction SHELX phasing ARP model building Coot model building