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High-resolution structure of TxtE with bound tryptophan substrate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 295 1.25 M Li2SO4, 0.5 M (NH4)2SO4
Crystal Properties Matthews coefficient Solvent content 3.29 62.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.832 α = 90 b = 79.657 β = 90 c = 112.554 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-12-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL12-2 0.9537 SSRL BL12-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.225 65.021 98 0.126 0.148 0.075 5.6 3.6 170299 170299
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.225 1.29 90.1 0.995 0.995 0.654 0.8 3 22690
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.225 65.02 161654 8558 97.87 0.139 0.13787 0.1377 0.16026 0.1602 RANDOM 22.58
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.57 0.38 0.19
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 27.396 r_sphericity_bonded 13.513 r_scangle_other 6.95 r_scbond_it 6.313 r_scbond_other 6.16 r_rigid_bond_restr 6.097 r_long_range_B_refined 5.605 r_long_range_B_other 5.434 r_mcangle_it 4.103 r_mcangle_other 4.103
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 27.396 r_sphericity_bonded 13.513 r_scangle_other 6.95 r_scbond_it 6.313 r_scbond_other 6.16 r_rigid_bond_restr 6.097 r_long_range_B_refined 5.605 r_long_range_B_other 5.434 r_mcangle_it 4.103 r_mcangle_other 4.103 r_mcbond_it 3.46 r_mcbond_other 3.46 r_angle_refined_deg 2.256 r_angle_other_deg 1.463 r_chiral_restr 0.173 r_bond_refined_d 0.025 r_gen_planes_refined 0.014 r_gen_planes_other 0.01 r_bond_other_d 0.001 r_dihedral_angle_1_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3104 Nucleic Acid Atoms Solvent Atoms 409 Heterogen Atoms 96
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction