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Crystal structure of Clostridium histolyticum ColG collagenase polycystic kidney disease-like domain at 1.4 Angstrom resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 277 41-49% MPD, 100 mM Bis-Tris (pH 5.5), 0.1-0.3% ammonium acetate
Crystal Properties Matthews coefficient Solvent content 2.33 47.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 24.998 α = 90 b = 71.763 β = 95.56 c = 47.894 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX300HE 2008-04-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 0.919 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 50 92.5 0.068 8.4 3.3 30393
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.45 83.7 0.358 2.4 2738
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.4 20.36 28786 1539 92.23 0.1696 0.167 0.2178 0.2113 RANDOM 18.343
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.06 -0.52 -0.71 0.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.742 r_dihedral_angle_4_deg 25.688 r_dihedral_angle_3_deg 11.241 r_scangle_it 7.502 r_dihedral_angle_1_deg 5.658 r_scbond_it 5.318 r_mcangle_it 3.82 r_rigid_bond_restr 2.712 r_mcbond_it 2.705 r_angle_refined_deg 1.65
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.742 r_dihedral_angle_4_deg 25.688 r_dihedral_angle_3_deg 11.241 r_scangle_it 7.502 r_dihedral_angle_1_deg 5.658 r_scbond_it 5.318 r_mcangle_it 3.82 r_rigid_bond_restr 2.712 r_mcbond_it 2.705 r_angle_refined_deg 1.65 r_chiral_restr 0.135 r_bond_refined_d 0.018 r_gen_planes_refined 0.014
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1281 Nucleic Acid Atoms Solvent Atoms 415 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction PDB_EXTRACT data extraction DENZO data reduction SCALEPACK data scaling