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IspG in complex with Inhibitor 8 (compound 1077)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4S38
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 0.1 M BIS-TRIS PROPANE, 20% PEG3350, 0.2 M Na2SO4 , pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.7 54.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 111.37 α = 90 b = 62.34 β = 127.15 c = 86.37 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2014-07-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.0 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 30 94.2 0.043 13.2 2.5 52217 49188 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.8 96.4 0.471 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4S38 1.7 10 49188 46728 2460 94.57 0.13388 0.13153 0.1462 0.1786 0.1866 RANDOM 29.988
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.54 0.01 -0.04 0.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.007 r_sphericity_free 32.345 r_dihedral_angle_4_deg 17.105 r_sphericity_bonded 14.642 r_dihedral_angle_3_deg 13.699 r_scangle_other 5.959 r_long_range_B_refined 5.921 r_long_range_B_other 5.732 r_dihedral_angle_1_deg 5.416 r_scbond_other 5.163
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.007 r_sphericity_free 32.345 r_dihedral_angle_4_deg 17.105 r_sphericity_bonded 14.642 r_dihedral_angle_3_deg 13.699 r_scangle_other 5.959 r_long_range_B_refined 5.921 r_long_range_B_other 5.732 r_dihedral_angle_1_deg 5.416 r_scbond_other 5.163 r_scbond_it 5.152 r_mcangle_it 3.921 r_mcangle_other 3.92 r_rigid_bond_restr 3.658 r_mcbond_it 3.21 r_mcbond_other 3.2 r_angle_refined_deg 1.691 r_angle_other_deg 0.77 r_chiral_restr 0.074 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3072 Nucleic Acid Atoms Solvent Atoms 232 Heterogen Atoms 20
Software Software Software Name Purpose XDS data scaling REFMAC refinement XDS data reduction XSCALE data scaling REFMAC phasing